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  <div class="section" id="dsview-dh5view-a-general-purpose-image-data-viewer">
<span id="dh5view"></span><h1>DSView / <tt class="docutils literal"><span class="pre">dh5view</span></tt> - A general purpose image data viewer<a class="headerlink" href="#dsview-dh5view-a-general-purpose-image-data-viewer" title="Permalink to this headline">¶</a></h1>
<p>DSView is a general purpose data viewer that supports all the <a class="reference internal" href="DataFormats.html#dataformats"><em>PYME Data Formats</em></a>
and additionally the <tt class="docutils literal"><span class="pre">QUEUE</span></tt> objects used in real-time data analysis. DSView may
either be invoked with the command:</p>
<div class="highlight-python"><pre>dh5view [options] filename</pre>
</div>
<p>or launched programatically by passing a <em>numpy</em> array or PYME <em>datasource</em> to
<tt class="docutils literal"><span class="pre">PYME.DSView.View3D</span></tt>.</p>
<div class="section" id="modules">
<h2>Modules<a class="headerlink" href="#modules" title="Permalink to this headline">¶</a></h2>
<p>DSView has a number of modules for performing various analysis tasks,
including <a class="reference internal" href="LocalisationAnalysis.html#localisationanalysis"><em>Localisation Analysis</em></a>, PSF Extraction, Deconvolution, and Tiling.</p>
</div>
<div class="section" id="modes">
<h2>Modes<a class="headerlink" href="#modes" title="Permalink to this headline">¶</a></h2>
<p>Modes represent personalities suitable for use with certain types of data
and determine which modules are loaded on startup. The mode used is determined
by filename, although modules which are not loaded by default can be inserted
later from the <strong>Modules</strong> menu.</p>
<p>The modes are:</p>
<table border="1" class="docutils">
<colgroup>
<col width="11%" />
<col width="35%" />
<col width="53%" />
</colgroup>
<thead valign="bottom">
<tr class="row-odd"><th class="head">Name</th>
<th class="head">File types</th>
<th class="head">Description</th>
</tr>
</thead>
<tbody valign="top">
<tr class="row-even"><td>lite</td>
<td>programatic invocation</td>
<td>no modules loaded</td>
</tr>
<tr class="row-odd"><td>LM</td>
<td><tt class="docutils literal"><span class="pre">.h5</span></tt>, <tt class="docutils literal"><span class="pre">QUEUE</span></tt></td>
<td>localisation analysis</td>
</tr>
<tr class="row-even"><td>blob</td>
<td><tt class="docutils literal"><span class="pre">.tif</span></tt></td>
<td>blob analysis and PSF extraction</td>
</tr>
<tr class="row-odd"><td>default</td>
<td>aything else</td>
<td>PSF extraction</td>
</tr>
</tbody>
</table>
<p>A particular mode can be forced by calling <tt class="docutils literal"><span class="pre">dh5view</span></tt> with the <tt class="docutils literal"><span class="pre">-m</span></tt> option, eg:</p>
<div class="highlight-python"><pre>dh5view -m LM filename</pre>
</div>
</div>
</div>


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<li><a class="reference internal" href="#">DSView / <tt class="docutils literal"><span class="pre">dh5view</span></tt> - A general purpose image data viewer</a><ul>
<li><a class="reference internal" href="#modules">Modules</a></li>
<li><a class="reference internal" href="#modes">Modes</a></li>
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